1,937 research outputs found
NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation
Biomedical researchers use ontologies to annotate their data with ontology
terms, enabling better data integration and interoperability. However, the
number, variety and complexity of current biomedical ontologies make it
cumbersome for researchers to determine which ones to reuse for their specific
needs. To overcome this problem, in 2010 the National Center for Biomedical
Ontology (NCBO) released the Ontology Recommender, which is a service that
receives a biomedical text corpus or a list of keywords and suggests ontologies
appropriate for referencing the indicated terms. We developed a new version of
the NCBO Ontology Recommender. Called Ontology Recommender 2.0, it uses a new
recommendation approach that evaluates the relevance of an ontology to
biomedical text data according to four criteria: (1) the extent to which the
ontology covers the input data; (2) the acceptance of the ontology in the
biomedical community; (3) the level of detail of the ontology classes that
cover the input data; and (4) the specialization of the ontology to the domain
of the input data. Our evaluation shows that the enhanced recommender provides
higher quality suggestions than the original approach, providing better
coverage of the input data, more detailed information about their concepts,
increased specialization for the domain of the input data, and greater
acceptance and use in the community. In addition, it provides users with more
explanatory information, along with suggestions of not only individual
ontologies but also groups of ontologies. It also can be customized to fit the
needs of different scenarios. Ontology Recommender 2.0 combines the strengths
of its predecessor with a range of adjustments and new features that improve
its reliability and usefulness. Ontology Recommender 2.0 recommends over 500
biomedical ontologies from the NCBO BioPortal platform, where it is openly
available.Comment: 29 pages, 8 figures, 11 table
Adaptive System for Collaborative Online Laboratories
International audienceIn the last decade, researchers in the Online Engineering field have attempted to provide hands-on, web-based approaches for Distance Learning. The primary goal of this research is to produce online laboratories that serve as the educational substitute for in situ laboratories. A limitation of existing online laboratories, however, is that they generally only allow a single user to be connected at a time. Since group learning activities, such as peer assistance, peer emulation, and collaborative experimental setup, are core dimensions of the traditional laboratory experience, this shortcoming is a significant pedagogical bottleneck. Recent research has focused on creating Collaborative Online Laboratories (COL) which attempt to address this shortcoming by focusing on the group awareness aspect of the laboratory learning experience. This paper discusses how group awareness can serve as a key component in replicating the collaborative aspect of learning in local laboratories. We discuss strategies for describing group awareness and how these strategies are associated both with a tutor's pedagogical objectives and in the management of the group of collaborating students. We describe an experimental system that we have developed that uses Semantic Web technologies to define a knowledge-driven system that allows researchers to describe and execute a variety of collaborative strategies for online laboratories
Explanation and Elaboration Document for the STROBE-Vet Statement: Strengthening the Reporting of Observational Studies in Epidemiology—Veterinary Extension
The STROBE (Strengthening the Reporting of Observational Studies in Epidemiology) statement was first published in 2007 and again in 2014. The purpose of the original STROBE was to provide guidance for authors, reviewers and editors to improve the comprehensiveness of reporting; however, STROBE has a unique focus on observational studies. Although much of the guidance provided by the original STROBE document is directly applicable, it was deemed useful to map those statements to veterinary concepts, provide veterinary examples and highlight unique aspects of reporting in veterinary observational studies. Here, we present the examples and explanations for the checklist items included in the STROBE-Vet Statement. Thus, this is a companion document to the STROBE-Vet Statement Methods and process document, which describes the checklist and how it was developed
Alcohol consumption among university students: a typology of consumption to aid the tailoring of effective public health policy
Objective: Elevated levels of alcohol consumption among university students are well documented. Policymakers have attempted to combat this issue at a university, national and international level. Tailoring public health policy to effectively tackle alcohol use is crucial. Using Q-methodology, the current study aims to develop a typology of alcohol consumption in the Irish university student population. Setting: A large Irish university. Participants Hundreds of possible statements on types of consumption were generated from a systematic review and a set of one-on-one interviews. These were reduced to 36 statements, 6 statements which define each of the 6 previously defined consumption types. Participants were advised to scan through the 36 statements and fill the statements into a ‘forced choice, standardised distribution’. Following this, a 45–90 min interview was conducted with students to illuminate subjectivity surrounding alcohol consumption. Analysis was conducted using PQ Method and NVivo software. Principal component analysis, followed by varimax rotation, was conducted to uncover the final factor information. Results: In total, 43 students completed the Q-study: 19 men and 24 women. A typology describing 4 distinct groupings of alcohol consumer was uncovered: the guarded drinker, the calculated hedonist, the peer-influenced drinker and the inevitable binger. Factor loadings of each of the consumer groupings were noted for type description. Conclusions: This is the first study to propose ideal types of alcohol consumption among a university student population. Further research is required to investigate the degree to which each of these ideal types is subscribed. However, this typology, in addition to informing public policy and strategies, will be a valuable analytic tool in future research
Mitigation of large-scale organic waste damage incorporating a demonstration of a closed loop conversion of poultry waste to energy at the point of source (2000-LS-1-M2) Final Report
peer-reviewedThe increase in the world population and urbanisation, have changed the way the world
produces food. As the demand for cheap and readily available food in the developed world
increases, high-density, intensive farming practices have replaced subsistence farming to
allow for the mass production of food. An unavoidable consequence of these farming\ud
practices is the generation of significant quantities of organic waste
Probing the fuzzy sphere regularisation in simulations of the 3d \lambda \phi^4 model
We regularise the 3d \lambda \phi^4 model by discretising the Euclidean time
and representing the spatial part on a fuzzy sphere. The latter involves a
truncated expansion of the field in spherical harmonics. This yields a
numerically tractable formulation, which constitutes an unconventional
alternative to the lattice. In contrast to the 2d version, the radius R plays
an independent r\^{o}le. We explore the phase diagram in terms of R and the
cutoff, as well as the parameters m^2 and \lambda. Thus we identify the phases
of disorder, uniform order and non-uniform order. We compare the result to the
phase diagrams of the 3d model on a non-commutative torus, and of the 2d model
on a fuzzy sphere. Our data at strong coupling reproduce accurately the
behaviour of a matrix chain, which corresponds to the c=1-model in string
theory. This observation enables a conjecture about the thermodynamic limit.Comment: 31 pages, 15 figure
Exploring women's sensory experiences of undergoing colposcopy and related procedures: implications for preparatory sensory information provision
INTRODUCTION: Some women experience distress during colposcopy examinations which is partly related to women's fear, or experience, of pain during the procedure. However, little is known about women's sensory experiences of colposcopy (other than pain) or what might impact on these experiences. The aim of this study was to explore women's sensory experiences of colposcopy and related procedures and identify factors which influenced negative sensory experiences. METHODS: In-depth interviews were conducted with 23 women who had undergone, for the first time, a colposcopy (some with related procedures, including punch biopsies and loop excision) as part of follow-up for abnormal cervical cytology. Interviews were analysed thematically using the Framework Approach to organise the data and identify emerging higher-order themes. RESULTS: Women described a range of sensory experiences including pain or discomfort, cramping, stinging and cold sensations (due to the application of acetic acid to the cervix). Four key themes emerged as important aspects of the overall sensory experience: levels of pain, treatment-specific sensations, anaesthetic-specific sensations and solution-specific sensations. Factors that may influence women having a negative sensory experience were sensory expectations of the procedure(s) and lack of preparatory sensory information. DISCUSSION: Our study provides unique in-depth insight into women's sensory experiences of colposcopy and related procedures and suggests women require more preparatory sensory information. The issues identified as contributing to women having a negative sensory experience may help inform the development of pre-colposcopy information which may better prepare women with abnormal cervical cytology for follow-up examinations
Noncommutative vector bundles over fuzzy CP^N and their covariant derivatives
We generalise the construction of fuzzy CP^N in a manner that allows us to
access all noncommutative equivariant complex vector bundles over this space.
We give a simplified construction of polarization tensors on S^2 that
generalizes to complex projective space, identify Laplacians and natural
noncommutative covariant derivative operators that map between the modules that
describe noncommuative sections. In the process we find a natural
generalization of the Schwinger-Jordan construction to su(n) and identify
composite oscillators that obey a Heisenberg algebra on an appropriate Fock
space.Comment: 34 pages, v2 contains minor corrections to the published versio
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